[.dnapath_list

Extract parts of a 'dnapath_list' object.

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

[.dnapath_list function

<dl><dt>x</dt>
<dd>A 'dnapath_list' object from <code>dnapath</code>.</dd>
<dt>i</dt>
<dd>The indices of pathways to extract.</dd>
<dt>...</dt>
<dd>Additional arguments are ignored.</dd></dl>

Arguments

Extract parts of a 'dnapath_list' object. — [.dnapath_list

<dl>

<dt>x</dt>
<dd>A 'dnapath_list' object from <code>dnapath</code>.</dd>


<dt>i</dt>
<dd>The indices of pathways to extract.</dd>


<dt>...</dt>
<dd>Additional arguments are ignored.</dd>

</dl>

[.dnapath_list: Extract parts of a 'dnapath_list' object.

Description

Usage

Value

Arguments